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SAMEA112905545: CB09.12A3a_Histology

Sample data for SAMEA112905545, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905209
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905545 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905545, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 2.8 per 100um
Acidic goblet cell number 13.14 None
CD3VillusBase 57.1 per 1000um squared
CD3VillusBaseEP 55.24 per 1000um squared
CD3VillusBaseLP 62.65 per 1000um squared
CD3VillusTip 52.88 per 1000um squared
CD3VillusTipEP 52.49 per 1000um squared
CD3VillusTipLP 54.31 per 1000um squared
CD3crypt 25.73 per 1000um squared
CD3cryptEP 24.68 per 1000um squared
CD3cryptLP 26.78 per 1000um squared
Crypt depth 130.3 um
Epithelial area 73.27 per 1000um squared
Mixed goblet cell density 14.3 per 100um
Mixed goblet cell number 67.12 None
Total goblet cell density 17.1 per 100um
Total goblet cell number 80.27 None
Villus height 469.4 um
Villus height: crypt depth ratio 3.6 um/um
Villus width 156.1 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CB09.12A3a None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905545