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SAMEA112905540: CB17.08A3a_Histology

Sample data for SAMEA112905540, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905208
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905540 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905540, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 0.3 per 100um
Acidic goblet cell number 1.42 None
CD3VillusBase 34.4 per 1000um squared
CD3VillusBaseEP 33.8 per 1000um squared
CD3VillusBaseLP 35.85 per 1000um squared
CD3VillusTip 10.89 per 1000um squared
CD3VillusTipEP 7.17 per 1000um squared
CD3VillusTipLP 21.52 per 1000um squared
CD3crypt 12.49 per 1000um squared
CD3cryptEP 16.99 per 1000um squared
CD3cryptLP 7.98 per 1000um squared
Crypt depth 102.7 um
Epithelial area 56.61 per 1000um squared
Mixed goblet cell density 24.4 per 100um
Mixed goblet cell number 115.68 None
Total goblet cell density 24.7 per 100um
Total goblet cell number 117.1 None
Villus height 474.1 um
Villus height: crypt depth ratio 4.62 um/um
Villus width 119.4 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CB17.08A3a None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905540