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SAMEA112905538: CB12.09A3a_Histology

Sample data for SAMEA112905538, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905029
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905538 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905538, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 0.7 per 100um
Acidic goblet cell number 3.43 None
CD3VillusBase 69.26 per 1000um squared
CD3VillusBaseEP 57.98 per 1000um squared
CD3VillusBaseLP 81.77 per 1000um squared
CD3VillusTip 58.94 per 1000um squared
CD3VillusTipEP 42.14 per 1000um squared
CD3VillusTipLP 91.66 per 1000um squared
CD3crypt 17.57 per 1000um squared
CD3cryptEP 16.7 per 1000um squared
CD3cryptLP 18.45 per 1000um squared
Crypt depth 130.4 um
Epithelial area 53.34 per 1000um squared
Mixed goblet cell density 11.6 per 100um
Mixed goblet cell number 56.87 None
Total goblet cell density 12.3 per 100um
Total goblet cell number 60.31 None
Villus height 490.3 um
Villus height: crypt depth ratio 3.76 um/um
Villus width 108.8 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CB12.09A3a None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905538