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SAMEA112905528: CB15.04A3a_Histology

Sample data for SAMEA112905528, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112904978
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905528 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905528, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 1.2 per 100um
Acidic goblet cell number 7.09 None
CD3VillusBase 25.84 per 1000um squared
CD3VillusBaseEP 25.27 per 1000um squared
CD3VillusBaseLP 28.05 per 1000um squared
CD3VillusTip 10.58 per 1000um squared
CD3VillusTipEP 8.91 per 1000um squared
CD3VillusTipLP 24.74 per 1000um squared
CD3crypt 20.33 per 1000um squared
CD3cryptEP 24.72 per 1000um squared
CD3cryptLP 15.94 per 1000um squared
Crypt depth 119 um
Epithelial area 87.94 per 1000um squared
Mixed goblet cell density 20.5 per 100um
Mixed goblet cell number 121.07 None
Total goblet cell density 21.7 per 100um
Total goblet cell number 128.16 None
Villus height 590.6 um
Villus height: crypt depth ratio 4.96 um/um
Villus width 148.9 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CB15.04A3a None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905528