HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905514: CB10.01A3a_Histology

Sample data for SAMEA112905514, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905374
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905514 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905514, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 1.4 per 100um
Acidic goblet cell number 7.78 None
CD3VillusBase 17.34 per 1000um squared
CD3VillusBaseEP 17.08 per 1000um squared
CD3VillusBaseLP 18.26 per 1000um squared
CD3VillusTip 10.03 per 1000um squared
CD3VillusTipEP 8.54 per 1000um squared
CD3VillusTipLP 15.56 per 1000um squared
CD3crypt 9.74 per 1000um squared
CD3cryptEP 6.28 per 1000um squared
CD3cryptLP 13.2 per 1000um squared
Crypt depth 121.2 um
Epithelial area 65.67 per 1000um squared
Mixed goblet cell density 19.6 per 100um
Mixed goblet cell number 108.9 None
Total goblet cell density 21 per 100um
Total goblet cell number 116.68 None
Villus height 555.6 um
Villus height: crypt depth ratio 4.58 um/um
Villus width 118.2 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CB10.01A3a None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905514