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SAMEA112905511: CB07.01A3a_Histology

Sample data for SAMEA112905511, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112904782
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905511 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905511, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 6 per 100um
Acidic goblet cell number 30.23 None
CD3VillusBase 24.21 per 1000um squared
CD3VillusBaseEP 22.2 per 1000um squared
CD3VillusBaseLP 30.23 per 1000um squared
CD3VillusTip 16.12 per 1000um squared
CD3VillusTipEP 13.29 per 1000um squared
CD3VillusTipLP 30.83 per 1000um squared
CD3crypt 9.9 per 1000um squared
CD3cryptEP 12.6 per 1000um squared
CD3cryptLP 7.2 per 1000um squared
Crypt depth 112.7 um
Epithelial area 89.29 per 1000um squared
Mixed goblet cell density 18.7 per 100um
Mixed goblet cell number 94.23 None
Total goblet cell density 24.7 per 100um
Total goblet cell number 124.46 None
Villus height 503.9 um
Villus height: crypt depth ratio 4.47 um/um
Villus width 177.2 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CB07.01A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905511