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SAMEA112905505: CB01.01A3a_Histology

Sample data for SAMEA112905505, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905370
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905505 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905505, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 5.5 per 100um
Acidic goblet cell number 19.58 None
CD3VillusBase 27.62 per 1000um squared
CD3VillusBaseEP 21.35 per 1000um squared
CD3VillusBaseLP 41.7 per 1000um squared
CD3VillusTip 23.1 per 1000um squared
CD3VillusTipEP 18.2 per 1000um squared
CD3VillusTipLP 35.82 per 1000um squared
CD3crypt 5.79 per 1000um squared
CD3cryptEP 5.26 per 1000um squared
CD3cryptLP 6.33 per 1000um squared
Crypt depth 210.13 um
Epithelial area 60.28 per 1000um squared
Mixed goblet cell density 18.83 per 100um
Mixed goblet cell number 67.05 None
Total goblet cell density 24.33 per 100um
Total goblet cell number 86.63 None
Villus height 356 um
Villus height: crypt depth ratio 1.69 um/um
Villus width 169.33 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CB01.01A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905505