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SAMEA112905499: CA11.18A3a_Histology

Sample data for SAMEA112905499, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905122
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905499 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905499, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 0.5 per 100um
Acidic goblet cell number 2.09 None
CD3VillusBase 29.64 per 1000um squared
CD3VillusBaseEP 36.68 per 1000um squared
CD3VillusBaseLP 17.12 per 1000um squared
CD3VillusTip 39.23 per 1000um squared
CD3VillusTipEP 35.98 per 1000um squared
CD3VillusTipLP 47.89 per 1000um squared
CD3crypt 42.34 per 1000um squared
CD3cryptEP 55.65 per 1000um squared
CD3cryptLP 29.02 per 1000um squared
Crypt depth 121 um
Epithelial area 52.36 per 1000um squared
Mixed goblet cell density 26.2 per 100um
Mixed goblet cell number 109.49 None
Total goblet cell density 26.7 per 100um
Total goblet cell number 111.58 None
Villus height 417.9 um
Villus height: crypt depth ratio 3.45 um/um
Villus width 125.3 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CA11.18A3a None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905499