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SAMEA112905497: CA09.18A3a_Histology

Sample data for SAMEA112905497, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905059
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905497 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905497, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 4.5 per 100um
Acidic goblet cell number 16.35 None
CD3VillusBase 32.93 per 1000um squared
CD3VillusBaseEP 32.86 per 1000um squared
CD3VillusBaseLP 33.08 per 1000um squared
CD3VillusTip 37.51 per 1000um squared
CD3VillusTipEP 31.29 per 1000um squared
CD3VillusTipLP 70.31 per 1000um squared
CD3crypt 32.43 per 1000um squared
CD3cryptEP 43.65 per 1000um squared
CD3cryptLP 21.2 per 1000um squared
Crypt depth 94.8 um
Epithelial area 42.01 per 1000um squared
Mixed goblet cell density 20.38 per 100um
Mixed goblet cell number 74.04 None
Total goblet cell density 24.88 per 100um
Total goblet cell number 90.4 None
Villus height 363.4 um
Villus height: crypt depth ratio 3.83 um/um
Villus width 115.6 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CA09.18A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905497