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SAMEA112905495: CA05.17A3a_Histology

Sample data for SAMEA112905495, a HoloFood histological chicken sample

Sample details
Chicken SAMEA112905145
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905495 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905495, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 3.8 per 100um
Acidic goblet cell number 14.46 None
CD3VillusBase 34.59 per 1000um squared
CD3VillusBaseEP 30.01 per 1000um squared
CD3VillusBaseLP 43.92 per 1000um squared
CD3VillusTip 26.77 per 1000um squared
CD3VillusTipEP 22.07 per 1000um squared
CD3VillusTipLP 38.75 per 1000um squared
CD3crypt 40.63 per 1000um squared
CD3cryptEP 54.44 per 1000um squared
CD3cryptLP 26.81 per 1000um squared
Crypt depth 101.71 um
Epithelial area 34.78 per 1000um squared
Mixed goblet cell density 22 per 100um
Mixed goblet cell number 83.69 None
Total goblet cell density 25.8 per 100um
Total goblet cell number 98.15 None
Villus height 380.4 um
Villus height: crypt depth ratio 3.74 um/um
Villus width 91.43 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CA05.17A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905495