HoloFood Data Portal
Access samples and data collected and generated by the HoloFood project.
Access samples and data collected and generated by the HoloFood project.
Sample data for SAMEA112905488, a HoloFood histological chicken sample
Metadata for sample SAMEA112905488, stored in BioSamples and ENA.
Download all as TSV| Marker | Measurement | Units |
|---|---|---|
| Organism | Gallus gallus | None |
| project | HoloFood | None |
| Marker | Measurement | Units |
|---|---|---|
| Acidic goblet cell density | 3.4 | per 100um |
| Acidic goblet cell number | 21.23 | None |
| CD3VillusBase | 29.46 | per 1000um squared |
| CD3VillusBaseEP | 31.88 | per 1000um squared |
| CD3VillusBaseLP | 23.51 | per 1000um squared |
| CD3VillusTip | 27.87 | per 1000um squared |
| CD3VillusTipEP | 26.82 | per 1000um squared |
| CD3VillusTipLP | 31.6 | per 1000um squared |
| CD3crypt | 26.32 | per 1000um squared |
| CD3cryptEP | 39.96 | per 1000um squared |
| CD3cryptLP | 12.68 | per 1000um squared |
| Crypt depth | 131.3 | um |
| Epithelial area | 48.84 | per 1000um squared |
| Mixed goblet cell density | 23 | per 100um |
| Mixed goblet cell number | 143.64 | None |
| Total goblet cell density | 26.4 | per 100um |
| Total goblet cell number | 164.87 | None |
| Villus height | 624.5 | um |
| Villus height: crypt depth ratio | 4.76 | um/um |
| Villus width | 78.2 | um |
| Marker | Measurement | Units |
|---|---|---|
| Body site | ileum tissue | None |
| Experiment | histology | None |
| Organism | Chicken | None |
| Project | HoloFood | None |
| Sample code | CA13.13A3a | None |
| Marker | Measurement | Units |
|---|---|---|
| Treatment code | CE | None |
| Treatment name | Prebiotic | None |
| Marker | Measurement | Units |
|---|---|---|
| Trial code | CA | None |
| Trial description | Trial 1 | None |
| Trial end | 2019-03-11 | None |
| Trial start | 2019-02-04 | None |
Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905488
