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SAMEA112905474: CA04.12A3a_Histology

Sample data for SAMEA112905474, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112904887
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905474 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905474, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 2.1 per 100um
Acidic goblet cell number 8.61 None
CD3VillusBase 69.89 per 1000um squared
CD3VillusBaseEP 61.58 per 1000um squared
CD3VillusBaseLP 83.5 per 1000um squared
CD3VillusTip 58.28 per 1000um squared
CD3VillusTipEP 49.85 per 1000um squared
CD3VillusTipLP 81.29 per 1000um squared
CD3crypt 22.76 per 1000um squared
CD3cryptEP 24.02 per 1000um squared
CD3cryptLP 21.49 per 1000um squared
Crypt depth 98.1 um
Epithelial area 47.77 per 1000um squared
Mixed goblet cell density 17.6 per 100um
Mixed goblet cell number 72.16 None
Total goblet cell density 19.7 per 100um
Total goblet cell number 80.77 None
Villus height 410 um
Villus height: crypt depth ratio 4.18 um/um
Villus width 116.5 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CA04.12A3a None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905474