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SAMEA112905466: CA14.09A3a_Histology

Sample data for SAMEA112905466, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112904970
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905466 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905466, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 0.88 per 100um
Acidic goblet cell number 3.21 None
CD3VillusBase 55.41 per 1000um squared
CD3VillusBaseEP 50.97 per 1000um squared
CD3VillusBaseLP 65.54 per 1000um squared
CD3VillusTip 57.8 per 1000um squared
CD3VillusTipEP 44.9 per 1000um squared
CD3VillusTipLP 88.21 per 1000um squared
CD3crypt 27.39 per 1000um squared
CD3cryptEP 33.83 per 1000um squared
CD3cryptLP 20.95 per 1000um squared
Crypt depth 116 um
Epithelial area 43.61 per 1000um squared
Mixed goblet cell density 21.88 per 100um
Mixed goblet cell number 80.37 None
Total goblet cell density 22.75 per 100um
Total goblet cell number 83.58 None
Villus height 367.4 um
Villus height: crypt depth ratio 3.17 um/um
Villus width 118.7 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CA14.09A3a None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905466