HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905452: CA22.01A3a_Histology

Sample data for SAMEA112905452, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112904869
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905452 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905452, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 1.2 per 100um
Acidic goblet cell number 2.89 None
CD3VillusBase 22.78 per 1000um squared
CD3VillusBaseEP 21.48 per 1000um squared
CD3VillusBaseLP 25.35 per 1000um squared
CD3VillusTip 11.89 per 1000um squared
CD3VillusTipEP 8.72 per 1000um squared
CD3VillusTipLP 21.61 per 1000um squared
CD3crypt 12.21 per 1000um squared
CD3cryptEP 15.07 per 1000um squared
CD3cryptLP 9.34 per 1000um squared
Crypt depth 116.6 um
Epithelial area 28.32 per 1000um squared
Mixed goblet cell density 24 per 100um
Mixed goblet cell number 57.84 None
Total goblet cell density 25.2 per 100um
Total goblet cell number 60.73 None
Villus height 241 um
Villus height: crypt depth ratio 2.07 um/um
Villus width 117.5 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CA22.01A3a None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905452