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SAMEA112905441: CA09.01A3a_Histology

Sample data for SAMEA112905441, a HoloFood histological chicken sample

Sample details
Chicken SAMEA112905018
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905441 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905441, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 1.67 per 100um
Acidic goblet cell number 5.52 None
CD3VillusBase 13.25 per 1000um squared
CD3VillusBaseEP 9.12 per 1000um squared
CD3VillusBaseLP 26.75 per 1000um squared
CD3VillusTip 7.99 per 1000um squared
CD3VillusTipEP 4.73 per 1000um squared
CD3VillusTipLP 20.51 per 1000um squared
CD3crypt 6.16 per 1000um squared
CD3cryptEP 9.52 per 1000um squared
CD3cryptLP 2.8 per 1000um squared
Crypt depth 117.25 um
Epithelial area 43.63 per 1000um squared
Mixed goblet cell density 22.67 per 100um
Mixed goblet cell number 75.06 None
Total goblet cell density 24.33 per 100um
Total goblet cell number 80.57 None
Villus height 331.1 um
Villus height: crypt depth ratio 2.82 um/um
Villus width 131.75 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CA09.01A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905441