HoloFood Data Portal
Access samples and data collected and generated by the HoloFood project.
Access samples and data collected and generated by the HoloFood project.
Sample data for SAMEA112905440, a HoloFood histological chicken sample
Metadata for sample SAMEA112905440, stored in BioSamples and ENA.
Download all as TSV| Marker | Measurement | Units |
|---|---|---|
| Organism | Gallus gallus | None |
| project | HoloFood | None |
| Marker | Measurement | Units |
|---|---|---|
| Acidic goblet cell density | 0.4 | per 100um |
| Acidic goblet cell number | 1.13 | None |
| CD3VillusBase | 17.21 | per 1000um squared |
| CD3VillusBaseEP | 14.67 | per 1000um squared |
| CD3VillusBaseLP | 25.18 | per 1000um squared |
| CD3VillusTip | 14.25 | per 1000um squared |
| CD3VillusTipEP | 11.45 | per 1000um squared |
| CD3VillusTipLP | 25.55 | per 1000um squared |
| CD3crypt | 15.52 | per 1000um squared |
| CD3cryptEP | 25.21 | per 1000um squared |
| CD3cryptLP | 5.84 | per 1000um squared |
| Crypt depth | 108.2 | um |
| Epithelial area | 37.24 | per 1000um squared |
| Mixed goblet cell density | 22.1 | per 100um |
| Mixed goblet cell number | 62.34 | None |
| Total goblet cell density | 22.5 | per 100um |
| Total goblet cell number | 63.47 | None |
| Villus height | 282.1 | um |
| Villus height: crypt depth ratio | 2.61 | um/um |
| Villus width | 132 | um |
| Marker | Measurement | Units |
|---|---|---|
| Body site | ileum tissue | None |
| Experiment | histology | None |
| Organism | Chicken | None |
| Project | HoloFood | None |
| Sample code | CA08.01A3a | None |
| Marker | Measurement | Units |
|---|---|---|
| Treatment code | CO | None |
| Treatment name | Probiotic | None |
| Marker | Measurement | Units |
|---|---|---|
| Trial code | CA | None |
| Trial description | Trial 1 | None |
| Trial end | 2019-03-11 | None |
| Trial start | 2019-02-04 | None |
Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905440
