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SAMEA112445428: SC02.03C1a

Sample data for SAMEA112445428, a HoloFood host-genomic salmon sample

Sample details
Salmon SAMEA112949857
Sample type
Host genome data icon host-genomic
API endpoint
/api/samples/SAMEA112445428 Copy API Endpoint
Sample metadata

Metadata for sample SAMEA112445428, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
ENA-FIRST-PUBLIC 2023-03-22 None
ENA-LAST-UPDATE 2023-03-22 None
External Id SAMEA112445428 None
INSDC first public 2023-03-22T12:24:24Z None
INSDC last update 2023-03-22T12:24:24Z None
INSDC status public None
SRA accession ERS14555713 None
Submitter Id SC02_03C1a_hostG None
collection date 2021-03-10 None
common name Atlantic salmon None
description Salmon host genomic data from Distal gut content; animal SC02.03 from tank SC02 with treatment Ørn None
geographic location (country and/or sea) Norway None
geographic location (latitude) 66.08 DD
geographic location (longitude) 12.588 DD
geographic location (region and locality) Dønna; Nordland county None
host body site Distal gut content None
host common name Atlantic salmon None
host diet Ensilaged blue mussel protein None
host diet treatment Ørn: SC Ensilaged blue mussel 5.0% None
host diet treatment concentration 0 % mass
host disease status Wounded:- None
host gutted mass 9 g
host length 9.5 cm
host scientific name Salmo salar None
host storage container LetSea Tank: Ørn None
host storage container pH 7.05 None
host storage container temperature 12.76 °C
host subject id SC02.03 None
host taxid 8030 None
host total mass 11.6 g
library name BEST None
library selection PCR None
nucleic acid extraction D-rex protocol None
organism Salmo salar None
project HoloFood None
project name HoloFood Salmon - Host Genome None
reference host genome for decontamination GCA_000000000.0 None
sample storage buffer Shield None
sample storage container 2ml E-matrix None
sample storage location UCPH None
sample storage temperature -20 °C
sample volume or weight for DNA extraction 0.2 mL
scientific_name Salmo salar None
sequencing method DNBSEQ-G400 None
title SC02.03C1a None
trial timepoint 0 day

Sample metadata

Marker Measurement Units
Body site distal gut content None
Experiment genomics None
Organism Salmon None
Project HoloFood None
Sample code SC02.03C1a None

Treatment metadata

Marker Measurement Units
Treatment code Orn None
Treatment concentration 5.0% %
Treatment description Ensilaged blue mussel protein None

Trial metadata

Marker Measurement Units
Environment Tanks (flow-through) None
Trial code SC None
Trial description Trial C: Blue mussel ensilage-dose response None
Trial end 2021-05-27 None
Trial start 2021-03-09 None
Nucleotide sequencing data

Sample SAMEA112445428 has nucleotide sequencing data in the European Nucleotide Archive (ENA): 5,652,023,287bp sequenced by 38,054,300 reads. View sample SAMEA112445428 in ENA

Related records in ENA

Data domain Accession Title/alias
Sample SAMEA112445428 SC02.03C1a
Reads (Run) ERR10824214 webin-reads-SC02_03C1a_hostG
Reads (Experiment) ERX10269251 DNBSEQ-G400 sequencing: Raw reads: SC02_03C1a_hostG
Project/Study PRJEB45274 HoloFood Salmon Host Genome

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112445428