Access samples and data collected and generated by the HoloFood project.
Sample data for SAMEA112445422, a HoloFood host-genomic salmon sample
Metadata for sample SAMEA112445422, stored in BioSamples and ENA.
Download all as TSVMarker | Measurement | Units |
---|---|---|
ENA-CHECKLIST | ERC000052 | None |
ENA-FIRST-PUBLIC | 2023-03-22 | None |
ENA-LAST-UPDATE | 2023-03-22 | None |
External Id | SAMEA112445422 | None |
INSDC center alias | UNIVERSITY OF COPENHAGEN | None |
INSDC center name | UNIVERSITY OF COPENHAGEN | None |
INSDC first public | 2023-03-22T12:24:24Z | None |
INSDC last update | 2023-03-22T12:24:24Z | None |
INSDC status | public | None |
SRA accession | ERS14555707 | None |
Submitter Id | SC01_01C1a_hostG | None |
adapters | AGATCGGAAGAGCACACGTCTGAACTCCAGTCA;AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT | None |
collection date | 2021-03-10 | None |
common name | Atlantic salmon | None |
description | Salmon host genomic data from Distal gut content; animal SC01.01 from tank SC01 with treatment Måse | None |
geographic location (country and/or sea) | Norway | None |
geographic location (latitude) | 66.08 | DD |
geographic location (longitude) | 12.588 | DD |
geographic location (region and locality) | Dønna; Nordland county | None |
host body site | Distal gut content | None |
host common name | Atlantic salmon | None |
host diet | Ensilaged blue mussel protein | None |
host diet treatment | Måse: SC Ensilaged blue mussel 2.5% | None |
host diet treatment concentration | 0 | % mass |
host disease status | Wounded:- | None |
host gutted mass | 12.4 | g |
host length | 10.7 | cm |
host scientific name | Salmo salar | None |
host storage container | LetSea Tank: Måse | None |
host storage container pH | 7.05 | None |
host storage container temperature | 12.76 | °C |
host subject id | SC01.01 | None |
host taxid | 8030 | None |
host total mass | 15.2 | g |
library name | BEST | None |
library selection | PCR | None |
nucleic acid extraction | D-rex protocol | None |
organism | Salmo salar | None |
project | HoloFood | None |
project name | HoloFood Salmon - Host Genome | None |
reference host genome for decontamination | GCA_000000000.0 | None |
sample storage buffer | Shield | None |
sample storage container | 2ml E-matrix | None |
sample storage location | UCPH | None |
sample storage temperature | -20 | °C |
sample volume or weight for DNA extraction | 0.2 | mL |
scientific_name | Salmo salar | None |
sequencing method | DNBSEQ-G400 | None |
title | SC01.01C1a | None |
trial timepoint | 0 | day |
Marker | Measurement | Units |
---|---|---|
Body site | distal gut content | None |
Experiment | genomics | None |
Organism | Salmon | None |
Project | HoloFood | None |
Sample code | SC01.01C1a | None |
Marker | Measurement | Units |
---|---|---|
Treatment code | Måse | None |
Treatment concentration | 2.5% | % |
Treatment description | Ensilaged blue mussel protein | None |
Marker | Measurement | Units |
---|---|---|
Environment | Tanks (flow-through) | None |
Trial code | SC | None |
Trial description | Trial C: Blue mussel ensilage-dose response | None |
Trial end | 2021-05-27 | None |
Trial start | 2021-03-09 | None |
Sample SAMEA112445422 has nucleotide sequencing data in the European Nucleotide Archive (ENA): 2,133,459,123bp sequenced by 14,357,882 reads. View sample SAMEA112445422 in ENA
Data domain | Accession | Title/alias |
---|---|---|
Sample | SAMEA112445422 | SC01.01C1a |
Reads (Run) | ERR10825001 | webin-reads-SC01_01C1a_hostG |
Reads (Experiment) | ERX10270038 | DNBSEQ-G400 sequencing: Raw reads: SC01_01C1a_hostG |
Project/Study | PRJEB45274 | HoloFood Salmon Host Genome |
Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112445422