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SAMEA110346484: CA03.14B1a

Sample data for SAMEA110346484, a HoloFood transcriptomic chicken sample


Sample details
Animal
Chicken SAMEA112905113
Sample type
Host transcriptome data icon transcriptomic
API endpoint
/api/samples/SAMEA110346484 Copy API Endpoint
Sample metadata

Metadata for sample SAMEA110346484, stored in BioSamples and ENA.

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Ena Checklist metadata

Marker Measurement Units
ENA-CHECKLIST ERC000052 None
ENA-FIRST-PUBLIC 2023-03-22 None
ENA-LAST-UPDATE 2023-03-22 None
External Id SAMEA110346484 None
INSDC center alias UNIVERSITY OF COPENHAGEN None
INSDC center name UNIVERSITY OF COPENHAGEN None
INSDC first public 2023-03-22T12:22:50Z None
INSDC last update 2023-03-22T12:22:50Z None
INSDC status public None
SRA accession ERS12443565 None
Submitter Id CA03_14B1a_RAW_HostT None
adapters AAGTCGGAGGCCAAGCGGTCTTAGGAAGACAA;AAGTCGGATCGTAGCCATGTCGTTC None
collection date 2019-03-11 None
common name chicken None
description Chicken meta genome data from Ileum mucosa; animal CA03.14 from cage CA03 with treatment CO None
geographic location (country and/or sea) Spain None
geographic location (latitude) 41.17 DD
geographic location (longitude) 1.1685 DD
geographic location (region and locality) El Morell; Tarragona None
host body site Ileum mucosa None
host breed Cobb None
host common name Chicken None
host diet treatment Probiotic None
host disease status Campylobacter:-;Salmonella:-;Clostridium:- None
host scientific name Gallus gallus None
host sex female None
host storage container temperature 21 °C
host subject id CA03.14 None
host taxid 9031 None
host total mass 2164 g
library name BEMT None
library selection PCR None
nucleic acid extraction D-rex protocol None
organism Gallus gallus None
project HoloFood None
project name HoloFood Chicken - Host Transcriptome None
reference host genome for decontamination GCF_000002315.6 None
sample storage buffer Shield None
sample storage container E-matrix 2ml None
sample storage location UCPH None
sample storage temperature -20 °C
sample volume or weight for DNA extraction 0.2 mL
scientific_name Gallus gallus None
sequencing method Illumiva Novaseq 6000 None
title CA03.14B1a None
trial length 35 day
trial timepoint 35 day

Sample metadata

Marker Measurement Units
Body site ileum mucosa None
Experiment transcriptomics None
Organism Chicken None
Project HoloFood None
Sample code CA03.14B1a None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None
Nucleotide sequencing data

Sample SAMEA110346484 has nucleotide sequencing data in the European Nucleotide Archive (ENA): 5,512,087,500bp sequenced by 36,747,250 reads. View sample SAMEA110346484 in ENA

Related records in ENA

Data domain Accession Title/alias
Sample SAMEA110346484 CA03.14B1a
Reads (Run) ERR9939723 webin-reads-CA03_14B1a_raw_HostT
Reads (Experiment) ERX9483165 Illumina NovaSeq 6000 sequencing: Raw reads: CA03_14B1a_raw_HostT
Project/Study PRJEB52095 HoloFood Chicken Host Transcriptome

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA110346484