MGYG000307556

Taxonomy

Photobacterium phosphoreum Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacterales > Vibrionaceae > Photobacterium > Photobacterium phosphoreum

Cluster representative

MGYG000299534

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000299534 on MGnify
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Annotations

MGYG000307556’s cluster representative genome MGYG000299534 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000299534 from each CAZy category.

API endpoint

/api/genome-catalogues/salmon-gut-v2-0/genomes/MGYG000307556 Copy API Endpoint

MGYG000307556’s cluster representative (MGYG000299534) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000299534’s sequence. Because MGYG000307556 has been clustered with MGYG000299534 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000307556.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000299534

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Containment	Sample accession	Animal accession	Treatment
0.24	SAMEA7688037	SAMEA112949387	Fermented algae meal (added in in oil coating)
0.23	SAMEA7687913	SAMEA112948886	Fermented algae meal (added in in oil coating)
0.21	SAMEA7688185	SAMEA112949785	Sanford Blue Mussel Meal