HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000307523

Details for MGYG000307523, a genome assembled from HoloFood salmon metagenomes


Genome details
Taxonomy
Brevinema Bacteria > Spirochaetota > Brevinematia > Brevinematales > Brevinemataceae > Brevinema
Cluster representative

MGYG000307514

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307514 on MGnify
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Annotations

MGYG000307523’s cluster representative genome MGYG000307514 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307514 from each CAZy category.

API endpoint
/api/genome-catalogues/salmon-gut-v2-0/genomes/MGYG000307523 Copy API Endpoint
Samples containing this genome

MGYG000307523’s cluster representative (MGYG000307514) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307514’s sequence. Because MGYG000307523 has been clustered with MGYG000307514 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000307523.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307514

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Containment Sample accession Animal accession Treatment
0.41 SAMEA7688213 Sanford Blue Mussel Meal
0.40 SAMEA7688120 Sanford Blue Mussel Meal
0.40 SAMEA7688235 Sanford Blue Mussel Meal
0.39 SAMEA7688181 Sanford Blue Mussel Meal
0.39 SAMEA7688192 Sanford Blue Mussel Meal
0.38 SAMEA7688111 Sanford Blue Mussel Meal
0.38 SAMEA7688214 Sanford Blue Mussel Meal
0.36 SAMEA7688138 Sanford Blue Mussel Meal
0.36 SAMEA7688130 Sanford Blue Mussel Meal
0.36 SAMEA7688201 Sanford Blue Mussel Meal