HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000307512

Details for MGYG000307512, a genome assembled from HoloFood salmon metagenomes


Genome details
Taxonomy
Cetobacterium_A Bacteria > Fusobacteriota > Fusobacteriia > Fusobacteriales > Fusobacteriaceae > Cetobacterium_A
Cluster representative

MGYG000299641

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000299641 on MGnify
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Annotations

MGYG000307512’s cluster representative genome MGYG000299641 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000299641 from each CAZy category.

API endpoint
/api/genome-catalogues/salmon-gut-v2-0/genomes/MGYG000307512 Copy API Endpoint
Samples containing this genome

MGYG000307512’s cluster representative (MGYG000299641) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000299641’s sequence. Because MGYG000307512 has been clustered with MGYG000299641 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000307512.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000299641

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Containment Sample accession Animal accession Treatment
0.94 SAMEA7687901 Fermented algae meal (added in in oil coating)
0.53 SAMEA7687898 Fermented algae meal (added in in oil coating)
0.32 SAMEA7687968 Fermented algae meal (added in in oil coating)
0.20 SAMEA7687927 Fermented algae meal (added in in oil coating)