MGYG000320878

Taxonomy

Coprenecus pullicola Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > UBA932 > Coprenecus > Coprenecus pullicola

Cluster representative

MGYG000319284

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319284 on MGnify
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Annotations

MGYG000320878’s cluster representative genome MGYG000319284 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319284 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320878 Copy API Endpoint

MGYG000320878’s cluster representative (MGYG000319284) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319284’s sequence. Because MGYG000320878 has been clustered with MGYG000319284 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320878.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319284

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025283	SAMEA112904873	Control
1.00	SAMEA10145595	SAMEA112904895	Control
1.00	SAMEA10145601	SAMEA112905257	Control
1.00	SAMEA10145597	SAMEA112904983	Control
1.00	SAMEA10145585	SAMEA112905186	Control
1.00	SAMEA9449937	SAMEA112904952	Probiotic
1.00	SAMEA7697613	SAMEA112905262	Prebiotic
1.00	SAMEA7697616	SAMEA112905295	Probiotic
1.00	SAMEA10105029	SAMEA112904769	Probiotic
1.00	SAMEA7697612	SAMEA112904835	Control