HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320855

Details for MGYG000320855, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Copromonas avistercoris Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Copromonas > Copromonas avistercoris
Cluster representative

MGYG000317325

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317325 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320855’s cluster representative genome MGYG000317325 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317325 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320855 Copy API Endpoint
Samples containing this genome

MGYG000320855’s cluster representative (MGYG000317325) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317325’s sequence. Because MGYG000320855 has been clustered with MGYG000317325 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320855.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317325

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Containment Sample accession Animal accession Treatment
1.00 SAMEA10455476 Probiotic
1.00 SAMEA9449843 Probiotic
0.98 SAMEA10455479 Prebiotic
0.97 SAMEA7025245 Probiotic
0.97 SAMEA7697592 Control
0.96 SAMEA9449833 Probiotic
0.96 SAMEA7025242 Control
0.96 SAMEA7025277 Control
0.96 SAMEA10455488 Prebiotic
0.96 SAMEA7025238 Probiotic