HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320821

Details for MGYG000320821, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coproplasma stercorigallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Coproplasma > Coproplasma stercorigallinarum
Cluster representative

MGYG000311580

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311580 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320821’s cluster representative genome MGYG000311580 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311580 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320821 Copy API Endpoint
Samples containing this genome

MGYG000320821’s cluster representative (MGYG000311580) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311580’s sequence. Because MGYG000320821 has been clustered with MGYG000311580 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320821.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311580

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.25 SAMEA7697589 Control
0.25 SAMEA9449866 Probiotic
0.25 SAMEA7697611 Prebiotic
0.25 SAMEA7697616 Probiotic
0.24 SAMEA7571798 Prebiotic
0.24 SAMEA7025270 Probiotic
0.24 SAMEA10159257 Control
0.24 SAMEA9449857 Prebiotic
0.23 SAMEA10455497 Probiotic
0.23 SAMEA7571762 Control