MGYG000320792

Taxonomy

Lachnoclostridium_A avicola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Lachnoclostridium_A > Lachnoclostridium_A avicola

Cluster representative

MGYG000312723

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312723 on MGnify
 Show other genomes in cluster

Annotations

MGYG000320792’s cluster representative genome MGYG000312723 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312723 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320792 Copy API Endpoint

MGYG000320792’s cluster representative (MGYG000312723) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312723’s sequence. Because MGYG000320792 has been clustered with MGYG000312723 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320792.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312723

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
0.26	SAMEA9449883	SAMEA112904892	Control
0.26	SAMEA7697601	SAMEA112905311	Prebiotic
0.26	SAMEA7697600	SAMEA112905286	Prebiotic
0.26	SAMEA9449895	SAMEA112905248	Probiotic
0.26	SAMEA9449846	SAMEA112905166	Prebiotic
0.26	SAMEA9449852	SAMEA112904941	Prebiotic
0.25	SAMEA7571862	SAMEA112904989	Probiotic
0.25	SAMEA7571800	SAMEA112904785	Probiotic
0.25	SAMEA7697612	SAMEA112904835	Control
0.25	SAMEA10105047	SAMEA112905233	Control