HoloFood Data Portal

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MGYG000320774

Details for MGYG000320774, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Scatovivens Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > Scatovivens
Cluster representative

MGYG000314101

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314101 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320774’s cluster representative genome MGYG000314101 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314101 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320774 Copy API Endpoint
Samples containing this genome

MGYG000320774’s cluster representative (MGYG000314101) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314101’s sequence. Because MGYG000320774 has been clustered with MGYG000314101 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320774.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314101

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Containment Sample accession Animal accession Treatment
0.48 SAMEA7025256 Prebiotic
0.47 SAMEA7697575 Control
0.46 SAMEA10454449 Prebiotic
0.44 SAMEA10104992 Prebiotic
0.44 SAMEA10105072 Prebiotic
0.41 SAMEA10159244 Probiotic
0.40 SAMEA9449892 Probiotic
0.40 SAMEA10104977 Control
0.40 SAMEA10104925 Control
0.39 SAMEA7571767 Control