HoloFood Data Portal

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MGYG000320764

Details for MGYG000320764, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Limadaptatus stercoravium Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-917 > Limadaptatus > Limadaptatus stercoravium
Cluster representative

MGYG000316780

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316780 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320764’s cluster representative genome MGYG000316780 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316780 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320764 Copy API Endpoint
Samples containing this genome

MGYG000320764’s cluster representative (MGYG000316780) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316780’s sequence. Because MGYG000320764 has been clustered with MGYG000316780 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320764.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316780

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Containment Sample accession Animal accession Treatment
0.92 SAMEA10145601 Control
0.86 SAMEA7571849 Prebiotic
0.85 SAMEA7697633 Prebiotic
0.84 SAMEA7571824 Probiotic
0.82 SAMEA10145587 Control
0.81 SAMEA7697626 Probiotic
0.81 SAMEA7025283 Control
0.79 SAMEA7025277 Control
0.78 SAMEA9449854 Prebiotic
0.78 SAMEA7571785 Probiotic