HoloFood Data Portal

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MGYG000320753

Details for MGYG000320753, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
An92 sp019114165 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > An92 > An92 sp019114165
Cluster representative

MGYG000319010

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319010 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320753’s cluster representative genome MGYG000319010 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319010 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320753 Copy API Endpoint
Samples containing this genome

MGYG000320753’s cluster representative (MGYG000319010) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319010’s sequence. Because MGYG000320753 has been clustered with MGYG000319010 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320753.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319010

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Containment Sample accession Animal accession Treatment
0.97 SAMEA10104916 Prebiotic
0.95 SAMEA7025239 Probiotic
0.94 SAMEA7025238 Probiotic
0.93 SAMEA9449897 Control
0.93 SAMEA10145564 Control
0.92 SAMEA10105037 Probiotic
0.91 SAMEA10104961 Probiotic
0.91 SAMEA10104957 Control
0.90 SAMEA7025240 Probiotic
0.90 SAMEA7697623 Probiotic