HoloFood Data Portal

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MGYG000320702

Details for MGYG000320702, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
UBA1417 sp900552925 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > UBA1417 > UBA1417 sp900552925
Cluster representative

MGYG000310845

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310845 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320702’s cluster representative genome MGYG000310845 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310845 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320702 Copy API Endpoint
Samples containing this genome

MGYG000320702’s cluster representative (MGYG000310845) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310845’s sequence. Because MGYG000320702 has been clustered with MGYG000310845 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320702.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310845

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Containment Sample accession Animal accession Treatment
0.24 SAMEA10159258 Probiotic
0.24 SAMEA10159263 Prebiotic
0.24 SAMEA10104925 Control
0.24 SAMEA9449853 Probiotic
0.23 SAMEA10105008 Control
0.23 SAMEA10105021 Probiotic
0.23 SAMEA7571864 Probiotic
0.23 SAMEA7697577 Prebiotic
0.22 SAMEA10130122 Prebiotic
0.22 SAMEA10105017 Probiotic