MGYG000320676

Taxonomy

Adamsella avium Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > CAJFVJ01 > Adamsella > Adamsella avium

Cluster representative

MGYG000318034

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318034 on MGnify
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Annotations

MGYG000320676’s cluster representative genome MGYG000318034 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318034 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320676 Copy API Endpoint

MGYG000320676’s cluster representative (MGYG000318034) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318034’s sequence. Because MGYG000320676 has been clustered with MGYG000318034 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320676.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318034

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA9449894	SAMEA112905203	Probiotic
0.99	SAMEA7697576	SAMEA112904922	Prebiotic
0.99	SAMEA7025248	SAMEA112905319	Probiotic
0.99	SAMEA9449836	SAMEA112904902	Probiotic
0.99	SAMEA7025240	SAMEA112904911	Probiotic
0.99	SAMEA7571785	SAMEA112904982	Probiotic
0.98	SAMEA9449833	SAMEA112904807	Probiotic
0.98	SAMEA9449852	SAMEA112904941	Prebiotic
0.98	SAMEA10455485	SAMEA112904918	Control
0.98	SAMEA9449865	SAMEA112904866	Control