HoloFood Data Portal

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MGYG000320609

Details for MGYG000320609, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ornithoclostridium Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA3700 > Ornithoclostridium
Cluster representative

MGYG000312087

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312087 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320609’s cluster representative genome MGYG000312087 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312087 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320609 Copy API Endpoint
Samples containing this genome

MGYG000320609’s cluster representative (MGYG000312087) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312087’s sequence. Because MGYG000320609 has been clustered with MGYG000312087 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320609.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312087

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7697608 Control
1.00 SAMEA7025285 Control
1.00 SAMEA10145587 Control
1.00 SAMEA7571768 Control
1.00 SAMEA10105029 Probiotic
0.97 SAMEA9449923 Probiotic
0.69 SAMEA10104961 Probiotic
0.69 SAMEA10145585 Control
0.68 SAMEA7697592 Control
0.68 SAMEA7697586 Prebiotic