HoloFood Data Portal

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MGYG000320561

Details for MGYG000320561, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Galligastranaerophilus Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > RUG14156 > Galligastranaerophilus
Cluster representative

MGYG000315705

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315705 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320561’s cluster representative genome MGYG000315705 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315705 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320561 Copy API Endpoint
Samples containing this genome

MGYG000320561’s cluster representative (MGYG000315705) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315705’s sequence. Because MGYG000320561 has been clustered with MGYG000315705 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320561.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315705

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Containment Sample accession Animal accession Treatment
0.73 SAMEA7697626 Probiotic
0.72 SAMEA10145597 Control
0.69 SAMEA7697613 Prebiotic
0.67 SAMEA9449928 Prebiotic
0.66 SAMEA9449935 Control
0.66 SAMEA7025275 Probiotic
0.65 SAMEA9449933 Prebiotic
0.65 SAMEA7697616 Probiotic
0.62 SAMEA9449937 Probiotic
0.60 SAMEA9449913 Probiotic