HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320530

Details for MGYG000320530, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pelethomonas intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Pelethomonas > Pelethomonas intestinigallinarum
Cluster representative

MGYG000315591

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315591 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320530’s cluster representative genome MGYG000315591 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315591 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320530 Copy API Endpoint
Samples containing this genome

MGYG000320530’s cluster representative (MGYG000315591) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315591’s sequence. Because MGYG000320530 has been clustered with MGYG000315591 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320530.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315591

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Containment Sample accession Animal accession Treatment
0.94 SAMEA7571807 Probiotic
0.94 SAMEA10454446 Probiotic
0.94 SAMEA10105013 Control
0.94 SAMEA7571849 Prebiotic
0.94 SAMEA10104961 Probiotic
0.94 SAMEA10104915 Control
0.94 SAMEA7571793 Prebiotic
0.94 SAMEA7571800 Probiotic
0.94 SAMEA7025266 Probiotic
0.94 SAMEA10104938 Prebiotic