HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320514

Details for MGYG000320514, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-269 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-269
Cluster representative

MGYG000320514

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320514 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320514’s cluster representative genome MGYG000320514 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320514 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320514 Copy API Endpoint
Samples containing this genome

MGYG000320514’s cluster representative (MGYG000320514) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320514’s sequence. Because MGYG000320514 has been clustered with MGYG000320514 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320514.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320514

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.23 SAMEA7697596 Prebiotic
0.22 SAMEA7571797 Control
0.22 SAMEA7697591 Probiotic
0.22 SAMEA10104963 Control
0.22 SAMEA9449840 Probiotic
0.22 SAMEA9449955 Probiotic
0.22 SAMEA10105073 Prebiotic
0.22 SAMEA10454438 Probiotic
0.22 SAMEA9449927 Prebiotic
0.21 SAMEA9449950 Prebiotic