MGYG000320510

Taxonomy

Scatomorpha intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Scatomorpha > Scatomorpha intestinigallinarum

Cluster representative

MGYG000319247

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319247 on MGnify
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Annotations

MGYG000320510’s cluster representative genome MGYG000319247 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319247 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320510 Copy API Endpoint

MGYG000320510’s cluster representative (MGYG000319247) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319247’s sequence. Because MGYG000320510 has been clustered with MGYG000319247 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320510.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319247

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Containment	Sample accession	Animal accession	Treatment
0.99	SAMEA7697592	SAMEA112904737	Control
0.99	SAMEA7025247	SAMEA112905298	Probiotic
0.99	SAMEA9449910	SAMEA112904894	Probiotic
0.99	SAMEA10104977	SAMEA112905312	Control
0.99	SAMEA10104923	SAMEA112904972	Control
0.99	SAMEA10104985	SAMEA112905021	Control
0.99	SAMEA7025269	SAMEA112904942	Probiotic
0.99	SAMEA7025245	SAMEA112904855	Probiotic
0.99	SAMEA10104973	SAMEA112904987	Probiotic
0.99	SAMEA7571778	SAMEA112905122	Control