HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320433

Details for MGYG000320433, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Heteroclostridium caecigallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-314 > Heteroclostridium > Heteroclostridium caecigallinarum
Cluster representative

MGYG000317867

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317867 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320433’s cluster representative genome MGYG000317867 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317867 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320433 Copy API Endpoint
Samples containing this genome

MGYG000320433’s cluster representative (MGYG000317867) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317867’s sequence. Because MGYG000320433 has been clustered with MGYG000317867 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320433.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317867

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.99 SAMEA7025234 Control
0.98 SAMEA7025240 Probiotic
0.97 SAMEA10104962 Control
0.97 SAMEA7025236 Probiotic
0.96 SAMEA7025247 Probiotic
0.94 SAMEA9449856 Prebiotic
0.94 SAMEA7722476 Control
0.94 SAMEA7025266 Probiotic
0.93 SAMEA9449849 Probiotic
0.93 SAMEA7025248 Probiotic