HoloFood Data Portal

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MGYG000320361

Details for MGYG000320361, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000316765

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316765 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320361’s cluster representative genome MGYG000316765 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316765 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320361 Copy API Endpoint
Samples containing this genome

MGYG000320361’s cluster representative (MGYG000316765) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316765’s sequence. Because MGYG000320361 has been clustered with MGYG000316765 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320361.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316765

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7571795 Prebiotic
1.00 SAMEA10455477 Probiotic
0.93 SAMEA10104911 Probiotic
0.91 SAMEA9449895 Probiotic
0.90 SAMEA9449840 Probiotic
0.77 SAMEA10104923 Control
0.65 SAMEA10145568 Control
0.64 SAMEA7571777 Control
0.62 SAMEA7571765 Probiotic
0.50 SAMEA10145562 Control