HoloFood Data Portal

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MGYG000320319

Details for MGYG000320319, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Anaerostipes avistercoris Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Anaerostipes > Anaerostipes avistercoris
Cluster representative

MGYG000320533

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320533 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320319’s cluster representative genome MGYG000320533 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320533 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320319 Copy API Endpoint
Samples containing this genome

MGYG000320319’s cluster representative (MGYG000320533) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320533’s sequence. Because MGYG000320319 has been clustered with MGYG000320533 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320319.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320533

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Containment Sample accession Animal accession Treatment
0.72 SAMEA7697628 Control
0.71 SAMEA10159257 Control
0.71 SAMEA7025273 Prebiotic
0.71 SAMEA7025251 Control
0.71 SAMEA10104987 Control
0.70 SAMEA10455479 Prebiotic
0.69 SAMEA10105030 Prebiotic
0.68 SAMEA10145560 Control
0.67 SAMEA7571770 Probiotic
0.67 SAMEA7025279 Probiotic