HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320311

Details for MGYG000320311, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Galligastranaerophilus_A gallistercoris Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > RUG14156 > Galligastranaerophilus_A > Galligastranaerophilus_A gallistercoris
Cluster representative

MGYG000311541

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311541 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320311’s cluster representative genome MGYG000311541 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311541 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320311 Copy API Endpoint
Samples containing this genome

MGYG000320311’s cluster representative (MGYG000311541) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311541’s sequence. Because MGYG000320311 has been clustered with MGYG000311541 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320311.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311541

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025269 Probiotic
1.00 SAMEA7697613 Prebiotic
1.00 SAMEA7697630 Control
1.00 SAMEA7025283 Control
1.00 SAMEA10145601 Control
1.00 SAMEA10105047 Control
1.00 SAMEA10454442 Probiotic
1.00 SAMEA7697637 Prebiotic
1.00 SAMEA10454449 Prebiotic
1.00 SAMEA10105067 Prebiotic