HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320206

Details for MGYG000320206, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000313451

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313451 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320206’s cluster representative genome MGYG000313451 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313451 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320206 Copy API Endpoint
Samples containing this genome

MGYG000320206’s cluster representative (MGYG000313451) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313451’s sequence. Because MGYG000320206 has been clustered with MGYG000313451 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320206.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313451

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.27 SAMEA10105072 Prebiotic
0.26 SAMEA9449923 Probiotic
0.26 SAMEA10454438 Probiotic
0.26 SAMEA10145585 Control
0.25 SAMEA7025256 Prebiotic
0.25 SAMEA7697575 Control
0.25 SAMEA10159244 Probiotic
0.24 SAMEA10104910 Probiotic
0.24 SAMEA10104937 Prebiotic
0.23 SAMEA7697579 Control