HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320161

Details for MGYG000320161, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Acutalibacter sp904419785 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > Acutalibacter > Acutalibacter sp904419785
Cluster representative

MGYG000314886

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314886 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320161’s cluster representative genome MGYG000314886 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314886 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320161 Copy API Endpoint
Samples containing this genome

MGYG000320161’s cluster representative (MGYG000314886) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314886’s sequence. Because MGYG000320161 has been clustered with MGYG000314886 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320161.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314886

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Containment Sample accession Animal accession Treatment
0.80 SAMEA7697599 Control
0.80 SAMEA7025246 Probiotic
0.80 SAMEA7697578 Control
0.79 SAMEA7571775 Control
0.78 SAMEA7025268 Control
0.78 SAMEA10455502 Probiotic
0.73 SAMEA9449928 Prebiotic
0.72 SAMEA9449873 Prebiotic
0.72 SAMEA10455495 Control
0.71 SAMEA7697620 Prebiotic