MGYG000319966

Taxonomy

Alistipes putredinis Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes > Alistipes putredinis

Cluster representative

MGYG000319253

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319253 on MGnify
 Show other genomes in cluster

Annotations

MGYG000319966’s cluster representative genome MGYG000319253 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319253 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319966 Copy API Endpoint

MGYG000319966’s cluster representative (MGYG000319253) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319253’s sequence. Because MGYG000319966 has been clustered with MGYG000319253 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319966.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319253

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10455495	SAMEA112904921	Control
1.00	SAMEA7571810	SAMEA112905369	Prebiotic
1.00	SAMEA10104977	SAMEA112905312	Control
1.00	SAMEA7571804	SAMEA112904986	Prebiotic
1.00	SAMEA10104974	SAMEA112904852	Probiotic
1.00	SAMEA10104993	SAMEA112905352	Prebiotic
1.00	SAMEA7571820	SAMEA112905089	Probiotic
1.00	SAMEA7697592	SAMEA112904737	Control
1.00	SAMEA10145575	SAMEA112904841	Control
1.00	SAMEA10104972	SAMEA112905094	Probiotic