HoloFood Data Portal

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MGYG000319957

Details for MGYG000319957, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000313182

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313182 on MGnify
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Annotations

MGYG000319957’s cluster representative genome MGYG000313182 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313182 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319957 Copy API Endpoint
Samples containing this genome

MGYG000319957’s cluster representative (MGYG000313182) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313182’s sequence. Because MGYG000319957 has been clustered with MGYG000313182 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319957.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313182

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Containment Sample accession Animal accession Treatment
0.97 SAMEA9449954 Probiotic
0.97 SAMEA10105032 Control
0.97 SAMEA7025282 Control
0.97 SAMEA7697617 Prebiotic
0.96 SAMEA10159244 Probiotic
0.96 SAMEA7722476 Control
0.96 SAMEA10104923 Control
0.96 SAMEA7697597 Probiotic
0.96 SAMEA7697608 Control
0.96 SAMEA7697590 Control