HoloFood Data Portal

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MGYG000319888

Details for MGYG000319888, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Enterococcus_E Bacteria > Firmicutes > Bacilli > Lactobacillales > Enterococcaceae > Enterococcus_E
Cluster representative

MGYG000312523

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312523 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319888’s cluster representative genome MGYG000312523 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312523 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319888 Copy API Endpoint
Samples containing this genome

MGYG000319888’s cluster representative (MGYG000312523) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312523’s sequence. Because MGYG000319888 has been clustered with MGYG000312523 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319888.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312523

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Containment Sample accession Animal accession Treatment
1.00 SAMEA10158019 Control
0.98 SAMEA7025239 Probiotic
0.97 SAMEA7722476 Control
0.89 SAMEA7025271 Probiotic
0.86 SAMEA10159197 Prebiotic
0.71 SAMEA10455479 Prebiotic
0.70 SAMEA9449877 Control
0.69 SAMEA7722473 Prebiotic
0.65 SAMEA10129975 Probiotic
0.65 SAMEA9449885 Control