HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000319885

Details for MGYG000319885, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000317429

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317429 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319885’s cluster representative genome MGYG000317429 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317429 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319885 Copy API Endpoint
Samples containing this genome

MGYG000319885’s cluster representative (MGYG000317429) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317429’s sequence. Because MGYG000319885 has been clustered with MGYG000317429 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319885.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317429

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.85 SAMEA10105045 Control
0.82 SAMEA10104910 Probiotic
0.82 SAMEA7697630 Control
0.82 SAMEA9449899 Prebiotic
0.81 SAMEA9449854 Prebiotic
0.81 SAMEA9449918 Probiotic
0.77 SAMEA9449928 Prebiotic
0.77 SAMEA7571868 Prebiotic
0.70 SAMEA10104929 Prebiotic
0.70 SAMEA14099421 Control