HoloFood Data Portal

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MGYG000319880

Details for MGYG000319880, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faecisoma merdavium Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Faecisoma > Faecisoma merdavium
Cluster representative

MGYG000315888

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315888 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319880’s cluster representative genome MGYG000315888 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315888 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319880 Copy API Endpoint
Samples containing this genome

MGYG000319880’s cluster representative (MGYG000315888) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315888’s sequence. Because MGYG000319880 has been clustered with MGYG000315888 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319880.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315888

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Containment Sample accession Animal accession Treatment
0.73 SAMEA10145585 Control
0.73 SAMEA10104925 Control
0.73 SAMEA9449901 Prebiotic
0.72 SAMEA7025269 Probiotic
0.72 SAMEA9449907 Prebiotic
0.72 SAMEA10104961 Probiotic
0.72 SAMEA10145583 Control
0.72 SAMEA7571778 Control
0.72 SAMEA10104993 Prebiotic
0.72 SAMEA10104950 Prebiotic