HoloFood Data Portal

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MGYG000319836

Details for MGYG000319836, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Onthoplasma Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Onthoplasma
Cluster representative

MGYG000319836

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319836 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319836’s cluster representative genome MGYG000319836 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319836 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319836 Copy API Endpoint
Samples containing this genome

MGYG000319836’s cluster representative (MGYG000319836) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319836’s sequence. Because MGYG000319836 has been clustered with MGYG000319836 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319836.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319836

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Containment Sample accession Animal accession Treatment
0.45 SAMEA10104993 Prebiotic
0.45 SAMEA9449901 Prebiotic
0.44 SAMEA10104945 Probiotic
0.44 SAMEA10159244 Probiotic
0.44 SAMEA9449865 Control
0.43 SAMEA9449852 Prebiotic
0.41 SAMEA7722478 Control
0.41 SAMEA10159245 Prebiotic
0.40 SAMEA7722473 Prebiotic
0.40 SAMEA10105039 Probiotic