HoloFood Data Portal

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MGYG000319830

Details for MGYG000319830, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-977 Bacteria > Proteobacteria > Alphaproteobacteria > RF32 > CAG-977 > CAG-977
Cluster representative

MGYG000313559

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313559 on MGnify
 Show other genomes in cluster
Annotations

MGYG000319830’s cluster representative genome MGYG000313559 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313559 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319830 Copy API Endpoint
Samples containing this genome

MGYG000319830’s cluster representative (MGYG000313559) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313559’s sequence. Because MGYG000319830 has been clustered with MGYG000313559 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319830.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313559

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7571870 Prebiotic
0.99 SAMEA10105065 Prebiotic
0.90 SAMEA14099425 Prebiotic
0.87 SAMEA7025289 Control
0.84 SAMEA7571824 Probiotic
0.80 SAMEA10105061 Control
0.77 SAMEA7697608 Control
0.76 SAMEA7697637 Prebiotic
0.75 SAMEA10105073 Prebiotic
0.72 SAMEA9449963 Probiotic