HoloFood Data Portal

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MGYG000319510

Details for MGYG000319510, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-269 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-269
Cluster representative

MGYG000309585

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309585 on MGnify
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Annotations

MGYG000319510’s cluster representative genome MGYG000309585 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309585 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000319510 Copy API Endpoint
Samples containing this genome

MGYG000319510’s cluster representative (MGYG000309585) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309585’s sequence. Because MGYG000319510 has been clustered with MGYG000309585 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000319510.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309585

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Containment Sample accession Animal accession Treatment
0.91 SAMEA9449892 Probiotic
0.89 SAMEA7697630 Control
0.89 SAMEA7697633 Prebiotic
0.88 SAMEA7025269 Probiotic
0.88 SAMEA7697600 Prebiotic
0.87 SAMEA9449860 Control
0.87 SAMEA10145562 Control
0.87 SAMEA9449833 Probiotic
0.86 SAMEA9449899 Prebiotic
0.85 SAMEA10455477 Probiotic